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    Illumina GoldenGate SNP Analysis of Lettuce

       SNP Identification
       Illumina GoldenGate Protocol
       OPA Summary Table
    Click on links to access   
     ContentTarget populations   Additional
    populations
    analyzed
    Comments
    OPA1 Candidate disease resistance Salinas x UC96US23   SNP discovery by Sanger resequencing
    OPA2 Candidate development
    & NBS-LRR containing
    Salinas x UC96US23   SNP discovery by Sanger resequencing,
    hypervariable sites in LRR
    OPA3 Candidate disease resistance,
    plant development,
    & ~evenly distributed genes
    Salinas x Valmaine   SNP discovery from IGA sequencing;
    Some repeated from OPA1 & OPA2
    OPA4 Expressed genes,
    ~evenly distributed markers
    Emperor x El Dorado
    Thompson x Cisco
    Pavane x Parade
      SNP discovery from IGA sequencing
    OPA5 Expressed genes,
    ~evenly distribution markers
    Emperor x El Dorado
    Thompson x Cisco
      SNP discovery from IGA sequencing
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