-- 2009 --
- Wroblewski T, Caldwell KS, Piskurewicz U, Cavanaugh KA, Xu H, Kozik A, Ochoa O, McHale LK, Lahre K, Jelenska J, Castillo JA, Blumenthal D, Vinatzer BA, Greenberg JT and Michelmore RW Comparative large-scale analysis of interactions between several crop species and the effector repertoires from multiple pathovars of Pseudomonas and Ralstonia. Plant Physiology. 2009 10.1104/pp.109.
-- 2008 --
- Kuang H, Caldwell KS, Meyers BC, Michelmore RW. Frequent sequence exchanges between homologs of RPP8 in Arabidopsis are not necessarily associated with genomic proximity. Plant J. 2008 54(1):69-80.
- Radwan O, Gandhi S, Heesacker A, Whitaker B, Taylor C, Plocik A, Kesseli R, Kozik A, Michelmore RW, Knapp SJ. Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower. Mol Genet Genomics. 2008 280(2):111-125
- Barker MS, Kane NC, Matvienko M, Kozik A, Michelmore RW, Knapp SJ, Rieseberg LH. Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Mol Biol Evol. 2008 25(11):2445-55.
- Tomilov AA, Tomilova NB, Wroblewski T, Michelmore R, Yoder JI. Trans-specific gene silencing between host and parasitic plants. Plant J. 2008 Nov;56(3):389-97.
- Mingai Li et al. Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species. Cladistics 2008
- Jeuken MJ, Pelgrom K, Stam P, Lindhout P. Efficient QTL detection for nonhost resistance in wild lettuce: backcross inbred lines versus F(2) population. Theor Appl Genet. 2008 116(6):845-57.
- Rojas-Barros P, Hu J, Jan CC. Molecular mapping of an apical branching gene of cultivated sunflower (Helianthus annuus L.). Theor Appl Genet. 2008 117(1):19-28.
- Zeng Q, Qiu F, Yuan L. Production of artemisinin by genetically-modified microbes. Biotechnol Lett. 2008 30(4):581-92.
- Oracz K, El-Maarouf-Bouteau H, Bogatek R, Corbineau F, Bailly C. Release of sunflower seed dormancy by cyanide: cross-talk with ethylene signalling pathway. J Exp Bot. 2008 59(8):2241-51.
- Kuang, H., van Eck, H.J., Sicard, D., Michelmore, R.W., Nevo, E. Evolution and genetic population structure of prickly lettuce (Lactuca serriola) and its RGC2 resistance gene cluster. Genetics 2008 178: 1547-1558.
- Argyris J, Dahal P, Hayashi E, Still DW, Bradford KJ. Genetic variation for lettuce seed thermoinhibition is associated with temperature-sensitive expression of abscisic Acid, gibberellin, and ethylene biosynthesis, metabolism, and response genes. Plant Physiol. 2008 148(2):926-47.
- Lai Z, Kane NC, Zou Y, Rieseberg LH. Natural variation in gene expression between wild and weedy populations of Helianthus annuus. Genetics. 2008 Aug;179(4):1881-90
- Chapman, M.A., J.L. Leebens-Mack, and J.M. Burke. Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA family. Mol. Biol. Evol. 2008 25(7):1260-73.
-- 2007 --
- Chen, J., Agrawal, V., Rattray, M., West, M.A.L., St.Clair, D.A., Michelmore, R.W., Coughlan, S.J., Meyers, B.C. A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. BMC Genomics. 2007 8:414
- Truco MJ, Antonise R, Lavelle D, Ochoa O, Kozik A, Witsenboer H, Fort SB, Jeuken MJ, Kesseli RV, Lindhout P, Michelmore RW, Peleman J. A high-density, integrated genetic linkage map of lettuce (Lactuca spp.). Theor Appl Genet. 2007 115(6):735-46
- Rose, L.E., Michelmore, R.W. & Langley, C.H. Natural variation in the Pto disease resistance gene within species of wild tomato (Lycopersicon) II. Population genetics of Pto. Genetics. 2007 175:1307-1319
- Wroblewski T, Piskurewicz U, Tomczak A, Ochoa O, Michelmore RW. Silencing of the major family of NBS-LRR-encoding genes in lettuce results in the loss of multiple resistance specificities. Plant J. 2007 51(5):803-18.
- Church SA, Livingstone K, Lai Z, Kozik A, Knapp SJ, Michelmore RW, Rieseberg LH. Using Variable Rate Models to Identify Genes Under Selection in Sequence Pairs: Their Validity and Limitations for EST Sequences. Journal of Molecular Evolution 2007 64(2):171-80.
- Ruth E. Timme, Jennifer V. Kuehl, Jeffrey L. Boore and Robert K. Jansen. A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats. American Journal of Botany. 2007 ;94:302-312.
- Terol J, Conesa A, Colmenero JM, Cercos M, Tadeo F, Agust?? J, Al??s E, Andres F, Soler G, Brumos J, Iglesias DJ, G??tz S, Legaz F, Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance. BMC Genomics. 2007 Jan 25;8:31.
- Yue, B., Miller, J.F., Hu, J. Experimenting with marker-assisted selection in confection sunflower germplasm enhancement. 29th Sunflower Research Workshop 2007 Jan, Fargo, ND.
- Fierro AC, Thuret R, Coen L, Perron M, Demeneix BA, Wegnez M, Gyapay G, Weissenbach J, Wincker P, Mazabraud A, Pollet N. Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis. BMC Genomics. 2007 May 16;8:118.
- Letousey, P.;??de Z??licourt, A.;??Vieira Dos Santos, C.;??Thoiron, S.;??Monteau, F.;??Simier, P.;??Thalouarn, P.;??Delavault, P. Molecular analysis of resistance mechanisms to Orobanche cumana in sunflower. Plant Pathology 2007 Jun, Volume 56,??Number 3, pp. 536-546(11)
- Oracz K, Bouteau HE-M, Farrant JM, Cooper K, Belghazi M, Job C, Job D, Corbineau F, Bailly C ROS production and protein oxidation as a novel mechanism for seed dormancy alleviation. The Plant Journal 2007 50: 452-465
- Mazier M, Botton E, Flamain F, Bouchet JP, Courtial B, Chupeau MC, Chupeau Y, Maisonneuve B, Lucas H. Successful gene tagging in lettuce using the Tnt1 retrotransposon from tobacco. Plant Physiol 2007 May;144(1):18-31
- Chapman, M.A. and J.M. Burke. DNA sequence diversity and the origin of cultivated safflower (Carthamus tinctorius L.; Asteraceae). BMC Plant Biol. 2007 7(1):60
- Brouillette, L.C., D.M. Rosenthal, L.H. Rieseberg, C. Lexer, R.L. Malmberg, L.A. Donovan. Genetic architecture of leaf ecophysiological traits in Helianthus. Journal of Heredity 2007 98:142-146.
- Rieseberg, L.H., Kim, S.-C. R.A. Randell, K.D. Whitney, B.L. Gross, C. Lexer, and K. Clay. Hybridization and the colonization of novel habitats by annual sunflowers. Genetica 2007 p. 149, vol. 129
- Wills, D.M. and J.M. Burke. Quantitative trait locus analysis of the early domestication of sunflower. Genetics. 2007 176(4):2589-99
- Yatabe, Y., N.C. Kane, C. Scotti-Saintagne, and L.H. Rieseberg. Rampant gene exchange across a strong reproductive barrier between the annual sunflowers, Helianthus annuus and H. petiolaris. Genetics 2007 175:1883-1893.
- Kane, N.C., and L.H. Rieseberg. Selective sweeps reveal candidate genes for adaptation to drought and salt tolerance in common sunflower, Helianthus annuus. Genetics 2007 175:1803-1812.
- Kolkman JM, Berry ST, Leon AJ, Slabaugh MB, Tang S, Gao W, Shintani DK, Burke JM, and Knapp SJ. Single nucleotide polymorphisms and linkage disequilibrium in sunflower. Genetics. 2007 177(1):457-68.
-- 2006 --
- West MA, van Leeuwen H, Kozik A, Kliebenstein DJ, Doerge RW, St Clair DA, Michelmore RW. High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. Genome Res 2006 Jun;16(6):787-95.
- Kuang, H., Ochoa, O.E., Nevo, E., Michelmore, R.W. The disease resistance gene Dm3 is infrequent in natural populations of Lactuca serriola due to deletions and frequent gene conversions at the RGC2 locus. Plant J. 2006 47(1):38-48
- Syed NH, Sorensen AP, Antonise R, van de Wiel C, van der Linden CG, van 't Westende W, Hooftman DA, den Nijs HC, Flavell AJ. A detailed linkage map of lettuce based on SSAP, AFLP and NBS markers. Theor Appl Genet. 2006 Feb;112(3):517-527.
- Tate JA, Ni Z, Scheen AC, Koh J, Gilbert CA, Lefkowitz D, Chen ZJ, Soltis PS, Soltis DE. Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid. Genetics. 2006 Jul;173(3):1599-1611.
- Phillip N. Miklasa, Jinguo Hub, Niklaus J. Gr??nwaldc and Karen M. Larsen. Potential Application of TRAP (Targeted Region Amplified Polymorphism) Markers for Mapping and Tagging Disease Resistance Traits in Common Bean. Crop Science. 2006 46: 910-916.
- Daniel J. Kliebenstein, Marilyn A.L. West, Hans van Leeuwen, Kyunga Kim, R.W. Doerge, Richard W. Michelmore, Dina A. St.Clair Genomic survey of gene expression diversity in Arabidopsis thaliana. Genetics 2006 172: 1179-1189.
- Konstantin??V.??Krutovsky, Christine??G.??Elsik, Marta??Matvienko, Alex??Kozik and David??B.??Neale. Conserved ortholog sets in forest trees. Tree Genetics & Genomes 2006 3:61-70
- Lai, Z., B. Gross, Y. Zou, J. Andrews, and L. H. Rieseberg. Detecting differential gene expression in homoploid hybrid sunflower species using microarrays. Molecular Ecology 2006 15:1213-1227.
- Pashley CH, Ellis JR, McCauley DE, Burke JM. EST databases as a source for molecular markers: lessons from Helianthus. J Hered. 2006 Jul-Aug;97(4):381-388.
- Ellis JR, Pashley CH, Burke JM, McCauley DE. High genetic diversity in a rare and endangered sunflower as compared to a common congener. Mol Ecol. 2006 Aug;15(9):2345-2355.
- Lai Z, Gross BL, Zou Y, Andrews J, Rieseberg LH. Microarray analysis reveals differential gene expression in hybrid sunflower species. Mol Ecol. 2006 Apr;15(5):1213-1227.
- Edelist, C., C. Lexer, C. Dillmann, D. Sicard, L.H. Rieseberg. Microsatellite signature of ecological selection for salt tolerance in a wild sunflower hybrid species, Helianthus paradoxus. Molecular Ecology 2006 15:4623-4634.
- Chen J, Hu J, Vick BA, Jan CC. Molecular mapping of a nuclear male-sterility gene in sunflower (Helianthus annuus L.) using TRAP and SSR markers. Theor Appl Genet. 2006 Jun;113(1):122-7.
- Liu A, Burke JM. Patterns of nucleotide diversity in wild and cultivated sunflower. Genetics. 2006 May;173(1):321-330.
- Tang, S., A. Leon, and S.J. Knapp Quantitative trait loci for genetically correlated seed traits are tightly linked to branching and pericarp pigment loci in sunflower. Crop Science 2006 p. 721, vol. 46.
- Hass CG, Tang S, Leonard S, Traber MG, Miller JF, Knapp SJ. Three non-allelic epistatically interacting methyltransferase mutations produce novel tocopherol (vitamin E) profiles in sunflower. Theor Appl Genet. 2006 Sep;113(5):767-782.
-- 2005 --
- Wroblewski, T., Tomczak, A., and Michelmore, R. W. Optimization of Agrobacterium-mediated transient assays of gene expression in lettuce, tomato and Arabidopsis. Plant Biotechnology Journal. 2005 3:259-273
- Argyris J, Truco MJ, Ochoa O, Knapp SJ, Still DW, Lenssen GM, Schut JW, Michelmore RW, Bradford KJ. Quantitative trait loci associated with seed and seedling traits in Lactuca. Theor Appl Genet. 2005 Nov;111(7):1365-1376.
- Mulvenna JP, Foley FM, Craik DJ. Discovery, structural determination, and putative processing of the precursor protein that produces the cyclic trypsin inhibitor sunflower trypsin inhibitor 1. J Biol Chem. 2005 Sep 16;280(37):32245-32253.
- Grube RC, Wintermantel WM, Hand P, Aburomia R, Pink DA, Ryder EJ. Genetic analysis and mapping of resistance to lettuce dieback: a soilborne disease caused by tombusviruses. Theor Appl Genet. 2005 Jan;110(2):259-68.
- McInnis SM, Costa LM, Gutierrez-Marcos JF, Henderson CA, Hiscock SJ. Isolation and characterization of a polymorphic stigma-specific class III peroxidase gene from Senecio squalidus L. (Asteraceae) Plant Mol Biol. 2005 Mar;57(5):659-677.
- Chase MW, Salamin N, Wilkinson M, Dunwell JM, Kesanakurthi RP, Haidar N, Savolainen V. Land plants and DNA barcodes: short-term and long-term goals. Philos Trans R Soc Lond B Biol Sci. 2005 Oct 29;360(1462):1889-1895. Review.
- Rojas-Barros, P., C.C. Jan, and J. Hu. Mapping of a recessive branching gene in RHA 271 using molecular markers. Proc. 27th Sunflower Research Forum 2005 Fargo, ND.
- Yang, W., Miller, S.A., Scott, J.W., Jones, J.B. and Francis, D.M. Mining tomato genome sequence databases for molecular markers: application to bacterial resistance and marker assisted selection. Acta Hort. (ISHS) 2005 695:241-250
- Torres M, Tomilov A, Tomilova N, Reagan R, Yoder J. Pscroph: a parasitic plant EST database enriched for parasite associated transcripts. BMC Plant Biology 2005 Nov 16;5:24
- JINGUO HU; OCHOA Oswaldo E.; TRUCO Maria Jos??; VICK Brady A. Application of the TRAP technique to lettuce (Lactuca sativa L.) genotyping. Euphytica. 2005 ; vol. 144, pp. 225-235
- Lai, Z., T. Nakazato, M. Salmaso, J. M. Burke, S. Tang, S. J. Knapp, and L.H. Rieseberg. Extensive chromosomal repatterning and the evolution of sterility barriers in hybrid sunflower species. Genetics 2005 171:291-303.
- Burke, J.M., S.J. Knapp, and L.H. Rieseberg. Genetic consequences of a recent selective sweep in cultivated sunflower. Genetics 2005 171:1933-1940
- Lexer, C., D.M. Rosenthal, O. Raymond, L. Donovan, and L.H. Rieseberg. Genetics of species differences in the wild annual sunflowers, Helianthus annuus and H. petiolaris. Genetics 2005 169: 2225-2239.
- Lai Z, Livingstone K, Zou Y, Church SA, Knapp SJ, Andrews J, Rieseberg LH. Identification and mapping of SNPs from ESTs in sunflower. Theor Appl Genet. 2005 Nov;111(8):1532-1544.
- Micic, Z., V. Hahn, E. Bauer, C.C. Schoen, S.J. Knapp, S. Tang, and A.E. Melchinger. Identification and validation of QTL for Sclerotinia midstalk rot resistance in sunflower by selective genotyping. Theoretical and Applied Genetics 2005 p. 233, vol. 111
- Wroblewski, T., Vinatzer, B., Caldwell, K., Piskurewicz, U., Cavanaugh, C., Jelenska, J., McHale, L., Kozik, A., Lee, M-W., Hotton, S., Fairfax, K., Teitzel, G., Castillo, J., Ochoa, O., Blumenthal, D., Greenberg, J. and Michelmore, R. Large-scale analysis of recognition of effector proteins from multiple Pseudomonas spp. by several crop species. MPMI Conference, December 2005, Merida, Mexico. 2005
-- 2004 --
- Kolkman, J.M., M.B. Slabaugh, J.M. Bruniard, S.T. Berry, S.B. Bushman, G. Abratti, A. Zambelli, J.F. Miller, A. Leon, and S.J. K Acetohydroxyacid synthase mutations conferring resistance to imidazolinone or sulfonylurea herbicides in sunflower. Theor Appl Genet. 2004 Oct;109(6):1147-1159.
- Christian Lexer, Zhao Lai and Loren H. Rieseberg. Candidate gene polymorphisms associated with salt tolerance in wild sunflower hybrids: implications for the origin of Helianthus. New Phytologist 2004 Jan, Vol 161:225
- Burke, J.M., Z. Lai, M. Salmaso, T. Nakazato, S. Tang, A. Heesacker, S.J. Knapp, and L. H. Rieseberg. Comparative mapping and rapid karyotypic evolution in the genus Helianthus. Genetics 2004 167:449-457.
- Harter, A.V., K.A. Gardner, D. Falush, D.L. Lentz, R. Bye, L.H. Rieseberg. Origin of extant domesticated sunflowers in eastern North America. Nature 2004 430:201-205.
-- 2003 --
- Moreno-Vaquez, S., Ochoa, O., Faber, N., Chao, S., Jacobs, J.M.E., Maisonneuve, B., Kesseli, R., Michelmore, R.W. SNP-based codominant markers for a recessive gene conferring resistance to corky root rot (Rhizomonas suberifaciens) in lettuce (Lactuca sativa). Genome. 2003 46:1059-1069
- Fern??ndez P, Paniego N, Lew S, Hopp HE, Heinz RA. Differential representation of sunflower ESTs in enriched organ-specific cDNA libraries in a small scale sequencing project. BMC Genomics. 2003 Sep 30;4(1):40
- Hu J, Vick BA. TRAP (target region amplification polymorphism), a novel marker technique for plant genotyping. Plant Mol Biol Rep 2003 21:289-294.
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