-- 2009 --
- McHale LK, Truco MJ, Kozik A, Wroblewski T, Ochoa OE, Lahre KA, Knapp SJ, Michelmore RW. The genomic architecture of disease resistance in lettuce. Theor Appl Genet. 2009 118(3):565-80.
 Supplemental Data
- Chapman MA, Hvala J, Strever J, Matvienko M, Kozik A, Michelmore RW, Tang S, Knapp SJ, Burke JM. Development, polymorphism, and cross-taxon utility of EST-SSR markers from safflower (Carthamus tinctorius L.). Theor Appl Genet. 2009 [Epub ahead of print]
-- 2008 --
- Barker MS, Kane NC, Matvienko M, Kozik A, Michelmore RW, Knapp SJ, Rieseberg LH. Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Mol Biol Evol. 2008 25(11):2445-55.
- Heesacker A, Kishore VK, Gao W, Tang S, Kolkman JM, Gingle A, Matvienko M, Kozik A, Michelmore RM, Lai Z, Rieseberg LH, Knapp SJ. SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and crosstaxa utility. Theor Appl Genet. 2008 117(7):1021-9.
- Radwan O, Gandhi S, Heesacker A, Whitaker B, Taylor C, Plocik A, Kesseli R, Kozik A, Michelmore RW, Knapp SJ. Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower. Mol Genet Genomics. 2008 280(2):111-125
- Lai Z, Kane NC, Zou Y, Rieseberg LH. Natural variation in gene expression between wild and weedy populations of Helianthus annuus. Genetics. 2008 Aug;179(4):1881-90
- Baack EJ, Sapir Y, Chapman MA, Burke JM, and Rieseberg LH. Selection on domestication traits and quantitative trait loci in crop-wild sunflower hybrids. Mol. Ecol. 2008 17(2):666-77.
- Argyris J, Dahal P, Hayashi E, Still DW, Bradford KJ. Genetic variation for lettuce seed thermoinhibition is associated with temperature-sensitive expression of abscisic Acid, gibberellin, and ethylene biosynthesis, metabolism, and response genes. Plant Physiol. 2008 148(2):926-47.
- Chapman, M.A., J.L. Leebens-Mack, and J.M. Burke. Positive selection and expression divergence following gene duplication in the sunflower CYCLOIDEA family. Mol. Biol. Evol. 2008 25(7):1260-73.
- Jeuken MJ, Pelgrom K, Stam P, Lindhout P. Efficient QTL detection for nonhost resistance in wild lettuce: backcross inbred lines versus F(2) population. Theor Appl Genet. 2008 116(6):845-57.
- Rojas-Barros P, Hu J, Jan CC. Molecular mapping of an apical branching gene of cultivated sunflower (Helianthus annuus L.). Theor Appl Genet. 2008 117(1):19-28.
- Zeng Q, Qiu F, Yuan L. Production of artemisinin by genetically-modified microbes. Biotechnol Lett. 2008 30(4):581-92.
- Oracz K, El-Maarouf-Bouteau H, Bogatek R, Corbineau F, Bailly C. Release of sunflower seed dormancy by cyanide: cross-talk with ethylene signalling pathway. J Exp Bot. 2008 59(8):2241-51.
- Mingai Li et al. Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species Cladistics 2008
- Alvarez I, Costa A, Feliner GN. Selecting single-copy nuclear genes for plant phylogenetics: a preliminary analysis for the Senecioneae (Asteraceae). J Mol Evol. 2008 66(3):276-91.
-- 2007 --
- Chapman, M.A. and J.M. Burke. DNA sequence diversity and the origin of cultivated safflower (Carthamus tinctorius L.; Asteraceae). BMC Plant Biol. 2007 7(1):60
- Chapman MA, Chang J, Weisman D, Kesseli RV, Burke JM. Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae). Theor Appl Genet. 2007 115(6):747-55
- Wills, D.M. and J.M. Burke. Quantitative trait locus analysis of the early domestication of sunflower. Genetics. 2007 176(4):2589-99
- Kolkman JM, Berry ST, Leon AJ, Slabaugh MB, Tang S, Gao W, Shintani DK, Burke JM, and Knapp SJ. Single nucleotide polymorphisms and linkage disequilibrium in sunflower. Genetics. 2007 177(1):457-68.
- Argyris J, Dahal P, Truco MJ, Ochoa O, Still DW, Michelmore RW, Bradford KJ Genetic analysis of lettuce seed thermoinhibition. Acta Horticulturae 2007
- Truco, M.J., Antonise, R., Lavelle, D., Ochoa, O., Kozik, A, Witsenboer,H., Fort, S., Jeuken, M.J.W., Kesseli, R. V., Lindhout, P., Michelmore, R.W., Peleman, J. A high-density, integrated genetic linkage map of lettuce (Lactuca spp.). Theor Appl Genet. 2007 115(6):735-46 Supplemental Data
- Rieseberg, L.H., Kim, S.-C. R.A. Randell, K.D. Whitney, B.L. Gross, C. Lexer, and K. Clay. Hybridization and the colonization of novel habitats by annual sunflowers. Genetica 2007 p. 149, vol. 129
- Zhang FZ, Wagstaff C, Rae AM, Sihota AK, Keevil CW, Rothwell SD, Clarkson GJ, Michelmore RW, Truco MJ, Dixon MS, Taylor G. QTLs for shelf life in lettuce co-locate with those for leaf biophysical properties but not with those for leaf developmental traits. J Exp Bot. 2007 58(6):1433-49.
- Church, Sheri1; Livingstone, Kevin; Lai, Zhao; Kozik, Alexander; Knapp, Steven; Michelmore, Richard; Rieseberg, Loren Using Variable Rate Models to Identify Genes Under Selection in Sequence Pairs: Their Validity and Limitations for EST Sequences. Journal of Molecular Evolution 2007 Feb, Volume 64, Number 2, pp. 171-180(10).
- Kane, N.C., and L.H. Rieseberg. Selective sweeps reveal candidate genes for adaptation to drought and salt tolerance in common sunflower, Helianthus annuus. Genetics 2007 175:1803–1812.
- Yatabe, Y., N.C. Kane, C. Scotti-Saintagne, and L.H. Rieseberg. Rampant gene exchange across a strong reproductive barrier between the annual sunflowers, Helianthus annuus and H. petiolaris. Genetics 2007 175:1883–1893.
- Brouillette, L.C., D.M. Rosenthal, L.H. Rieseberg, C. Lexer, R.L. Malmberg, L.A. Donovan. Genetic architecture of leaf ecophysiological traits in Helianthus. Journal of Heredity 2007 98:142-146.
- Mazier M, Botton E, Flamain F, Bouchet JP, Courtial B, Chupeau MC, Chupeau Y, Maisonneuve B, Lucas H. Successful gene tagging in lettuce using the Tnt1 retrotransposon from tobacco. Plant Physiol 2007 May;144(1):18-31
- Letousey, P.; de Zélicourt, A.; Vieira Dos Santos, C.; Thoiron, S.; Monteau, F.; Simier, P.; Thalouarn, P.; Delavault, P. Molecular analysis of resistance mechanisms to Orobanche cumana in sunflower. Plant Pathology 2007 Jun, Volume 56, Number 3, pp. 536-546(11)
- Fierro AC, Thuret R, Coen L, Perron M, Demeneix BA, Wegnez M, Gyapay G, Weissenbach J, Wincker P, Mazabraud A, Pollet N. Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis. BMC Genomics. 2007 May 16;8:118.
- Yue, B., Miller, J.F., Hu, J. Experimenting with marker-assisted selection in confection sunflower germplasm enhancement. 29th Sunflower Research Workshop 2007 Jan, Fargo, ND.
- Ruth E. Timme, Jennifer V. Kuehl, Jeffrey L. Boore and Robert K. Jansen. A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats. American Journal of Botany. 2007 ;94:302-312.
- Terol J, Conesa A, Colmenero JM, Cercos M, Tadeo F, Agustí J, Alós E, Andres F, Soler G, Brumos J, Iglesias DJ, Götz S, Legaz F, Argout X, Courtois B, Ollitrault P, Dossat C, Wincker P, Morillon R, Talon M. Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance. BMC Genomics. 2007 Jan 25;8:31.
- Krystyna Oracz, Hayat El-Maarouf Bouteau, Jill M. Farrant, Keren Cooper, Maya Belghazi, Claudette Job, Dominique Job, Françoise Corbineau, Christophe Bailly. ROS production and protein oxidation as a novel mechanism for seed dormancy alleviation. The Plant Journal. 2007 50 (3), 452–465.
- Oracz K, Bouteau HE-M, Farrant JM, Cooper K, Belghazi M, Job C, Job D, Corbineau F, Bailly C ROS production and protein oxidation as a novel mechanism for seed dormancy alleviation. The Plant Journal 2007 50: 452-465
-- 2006 --
- Bushman, B.S., Scholte, A.A., Cornish, K., Scott, D.J., Brichta, J.L., Vederas, J.C., Ochoa, O., Michelmore, R.W., Shintani, D., Knapp, S.J. Identification and characterization of natural rubber from two Lactuca species. Phytochemistry 2006 67:2590-2596
- Tang, S., A. Leon, and S.J. Knapp Quantitative trait loci for genetically correlated seed traits are tightly linked to branching and pericarp pigment loci in sunflower. Crop Science 2006 p. 721, vol. 46.
- West MA, van Leeuwen H, Kozik A, Kliebenstein DJ, Doerge RW, St Clair DA, Michelmore RW. High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. Genome Res 2006 Jun;16(6):787-95.
- Edelist, C., C. Lexer, C. Dillmann, D. Sicard, L.H. Rieseberg. Microsatellite signature of ecological selection for salt tolerance in a wild sunflower hybrid species, Helianthus paradoxus. Molecular Ecology 2006 15:4623-4634.
- Konstantin V. Krutovsky, Christine G. Elsik, Marta Matvienko, Alex Kozik and David B. Neale. Conserved ortholog sets in forest trees. Tree Genetics & Genomes 2006 3:61–70
- Chen J, Hu J, Vick BA, Jan CC. Molecular mapping of a nuclear male-sterility gene in sunflower (Helianthus annuus L.) using TRAP and SSR markers. Theor Appl Genet. 2006 Jun;113(1):122-7.
- Tang S, Hass CG, Knapp SJ. Ty3/gypsy-like retrotransposon knockout of a 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase is non-lethal, uncovers a cryptic paralogous mutation, and produces novel tocopherol (vitamin E) profiles in sunflower. Theor Appl Genet. 2006 Sep;113(5):783-799.
- Hass CG, Tang S, Leonard S, Traber MG, Miller JF, Knapp SJ. Three non-allelic epistatically interacting methyltransferase mutations produce novel tocopherol (vitamin E) profiles in sunflower. Theor Appl Genet. 2006 Sep;113(5):767-782.
- Ellis JR, Pashley CH, Burke JM, McCauley DE. High genetic diversity in a rare and endangered sunflower as compared to a common congener. Mol Ecol. 2006 Aug;15(9):2345-2355.
- Timms L, Jimenez R, Chase M, Lavelle D, McHale L, Kozik A, Lai Z, Heesacker A, Knapp S, Rieseberg L, Michelmore R, Kesseli R. Analyses of synteny between Arabidopsis thaliana and species in the Asteraceae reveal a complex network of small syntenic. Genetics. 2006 Aug;173(4):2227-2235.
- Pashley CH, Ellis JR, McCauley DE, Burke JM. EST databases as a source for molecular markers: lessons from Helianthus. J Hered. 2006 Jul-Aug;97(4):381-388.
- Lai, Z., B. Gross, Y. Zou, J. Andrews, and L. H. Rieseberg. Detecting differential gene expression in homoploid hybrid sunflower species using microarrays. Molecular Ecology 2006 15:1213-1227.
- Liu A, Burke JM. Patterns of nucleotide diversity in wild and cultivated sunflower. Genetics. 2006 May;173(1):321-330.
- Lai Z, Gross BL, Zou Y, Andrews J, Rieseberg LH. Microarray analysis reveals differential gene expression in hybrid sunflower species. Mol Ecol. 2006 Apr;15(5):1213-1227.
- Tate JA, Ni Z, Scheen AC, Koh J, Gilbert CA, Lefkowitz D, Chen ZJ, Soltis PS, Soltis DE. Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid. Genetics. 2006 Jul;173(3):1599-1611.
- Ro DK, Paradise EM, Ouellet M, Fisher KJ, Newman KL, Ndungu JM, Ho KA, Eachus RA, Ham TS, Kirby J, Chang MC, Withers ST, Shiba Y, Sarpong R, Keasling JD. Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature. 2006 Apr 13;440(7086):940-943.
- Syed NH, Sorensen AP, Antonise R, van de Wiel C, van der Linden CG, van 't Westende W, Hooftman DA, den Nijs HC, Flavell AJ. A detailed linkage map of lettuce based on SSAP, AFLP and NBS markers. Theor Appl Genet. 2006 Feb;112(3):517-527.
- Phillip N. Miklasa, Jinguo Hub, Niklaus J. Grünwaldc and Karen M. Larsen. Potential Application of TRAP (Targeted Region Amplified Polymorphism) Markers for Mapping and Tagging Disease Resistance Traits in Common Bean. Crop Science. 2006 46: 910-916.
-- 2005 --
- Micic, Z., V. Hahn, E. Bauer, C.C. Schoen, S.J. Knapp, S. Tang, and A.E. Melchinger. Identification and validation of QTL for Sclerotinia midstalk rot resistance in sunflower by selective genotyping Theoretical and Applied Genetics 2005 p. 233, vol. 111
- Lexer, C., D.M. Rosenthal, O. Raymond, L. Donovan, and L.H. Rieseberg. Genetics of species differences in the wild annual sunflowers, Helianthus annuus and H. petiolaris. Genetics 2005. 169: 2225-2239.
- Lai, Z., T. Nakazato, M. Salmaso, J. M. Burke, S. Tang, S. J. Knapp, and L.H. Rieseberg. Extensive chromosomal repatterning and the evolution of sterility barriers in hybrid sunflower species. Genetics 2005 171:291-303.
- Burke, J.M., S.J. Knapp, and L.H. Rieseberg. Genetic consequences of a recent selective sweep in cultivated sunflower. Genetics 2005 171:1933-1940
- Gandhi SD, Heesacker AF, Freeman CA, Argyris J, Bradford K, Knapp SJ. The self-incompatibility locus (S) and quantitative trait loci for self-pollination and seed dormancy in sunflower. Theor Appl Genet. 2005 Aug;111(4):619-29.
- Lai Z, Livingstone K, Zou Y, Church SA, Knapp SJ, Andrews J, Rieseberg LH. Identification and mapping of SNPs from ESTs in sunflower. Theor Appl Genet. 2005 Nov;111(8):1532-1544.
- Argyris J, Truco MJ, Ochoa O, Knapp SJ, Still DW, Lenssen GM, Schut JW, Michelmore RW, Bradford KJ. Quantitative trait loci associated with seed and seedling traits in Lactuca. Theor Appl Genet. 2005 Nov;111(7):1365-1376.
- JINGUO HU; OCHOA Oswaldo E.; TRUCO Maria José; VICK Brady A. Application of the TRAP technique to lettuce (Lactuca sativa L.) genotyping. Euphytica. 2005 ; vol. 144, pp. 225-235
- Grube RC, Wintermantel WM, Hand P, Aburomia R, Pink DA, Ryder EJ. Genetic analysis and mapping of resistance to lettuce dieback: a soilborne disease caused by tombusviruses. Theor Appl Genet. 2005 Jan;110(2):259-68.
- Chase MW, Salamin N, Wilkinson M, Dunwell JM, Kesanakurthi RP, Haidar N, Savolainen V. Land plants and DNA barcodes: short-term and long-term goals. Philos Trans R Soc Lond B Biol Sci. 2005 Oct 29;360(1462):1889-1895. Review.
- Mulvenna JP, Foley FM, Craik DJ. Discovery, structural determination, and putative processing of the precursor protein that produces the cyclic trypsin inhibitor sunflower trypsin inhibitor 1. J Biol Chem. 2005 Sep 16;280(37):32245-32253.
- McInnis SM, Costa LM, Gutierrez-Marcos JF, Henderson CA, Hiscock SJ. Isolation and characterization of a polymorphic stigma-specific class III peroxidase gene from Senecio squalidus L. (Asteraceae). Plant Mol Biol. 2005 Mar;57(5):659-677.
- Rojas-Barros, P., C.C. Jan, and J. Hu. Mapping of a recessive branching gene in RHA 271 using molecular markers. Proc. 27th Sunflower Research Forum 2005 Fargo, ND.
- Yang, W., Miller, S.A., Scott, J.W., Jones, J.B. and Francis, D.M. Mining tomato genome sequence databases for molecular markers: application to bacterial resistance and marker assisted selection. Acta Hort. (ISHS) 2005 695:241-250
- Torres M, Tomilov A, Tomilova N, Reagan R, Yoder J. Pscroph: a parasitic plant EST database enriched for parasite associated transcripts. BMC Plant Biology 2005 Nov 16;5:24
-- 2004 --
- Kolkman, J.M., M.B. Slabaugh, J.M. Bruniard, S.T. Berry, S.B. Bushman, G. Abratti, A. Zambelli, J.F. Miller, A. Leon, and S.J. Knapp. Acetohydroxyacid synthase mutations conferring resistance to imidazolinone or sulfonylurea herbicides in wild sunflower biotypes. Theoretical and Applied Genetics 2004 p. 1147, vol. 109.
- Perez-Vich, B., B. Akhtouch, S.J. Knapp, A.J. Leon, L. Velasco, J.M. Fernandez-Martinez, and S.T. Berry Quantitative trait loci for broomrape (Orobanche cumana Wallr.) resistance in sunflower. Theoretical and Applied Genetics 2004 p. 92, vol. 109.
- Christian Lexer, Zhao Lai and Loren H. Rieseberg. Candidate gene polymorphisms associated with salt tolerance in wild sunflower hybrids: implications for the origin of Helianthus paradoxus, a diploid hybrid species. New Phytologist 2004 Jan, Vol 161:225
- Burke, J.M., Z. Lai, M. Salmaso, T. Nakazato, S. Tang, A. Heesacker, S.J. Knapp, and L. H. Rieseberg. Comparative mapping and rapid karyotypic evolution in the genus Helianthus. Genetics 2004 167:449-457.
- Harter, A.V., K.A. Gardner, D. Falush, D.L. Lentz, R. Bye, L.H. Rieseberg. Origin of extant domesticated sunflowers in eastern North America. Nature 2004 430:201-205.
- Kolkman JM, Slabaugh MB, Bruniard JM, Berry S, Bushman BS, Olungu C, Maes N, Abratti G, Zambelli A, Miller JF, Leon A, Knapp SJ. Acetohydroxyacid synthase mutations conferring resistance to imidazolinone or sulfonylurea herbicides in sunflower. Theor Appl Genet. 2004 Oct;109(6):1147-1159.
-- 2003 --
- C. LEXER, M. E. WELCH, J . L. DURPHY and L. H. RIESEBERG. Natural selection for salt tolerance quantitative trait loci (QTLs) in wild sunflower hybrids: Implications for the origin of Helianthus paradoxus, a diploid hybrid species. Molecular Ecology 2003 12, 1225–1235
- Fernández P, Paniego N, Lew S, Hopp HE, Heinz RA. Differential representation of sunflower ESTs in enriched organ-specific cDNA libraries in a small scale sequencing project. BMC Genomics. 2003 Sep 30;4(1):40
- Hu J, Vick BA. TRAP (target region amplification polymorphism), a novel marker technique for plant genotyping. Plant Mol Biol Rep 2003 21:289–294.
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