EST Library Analysis Reference Files

• PlantRefSeq_2006_10_03_SP.fasta
  -- NCBI Plant RefSeq SET

• A_thaliana_ATGC_2006_08_24.cds_dna.fasta
  -- predicted open reading frames, DNA file
• A_thaliana_ATGC_2006_08_24.protein.fasta
  -- predicted open reading frames, translated protein file
• A_thaliana_ATGC_2006_08_24.xcoords.tab
  -- genome coordinates of predicted ORFs

• A_thaliana_ATGC_2006_08_24.cds_dna.COS_STRICT.fasta
  -- single copy genes (DNA), 3790 plant (Arabidopsis) specific sequences
• A_thaliana_ATGC_2006_08_24.protein.COS_STRICT.fasta
  -- single copy genes (proteins), 3790 plant (Arabidopsis) specific sequences
• A_thaliana_ATGC_2006_08_24.protein.COS_STRICT.IDs.txt
  -- single copy genes, 3790 plant (Arabidopsis) specific sequence IDs
• A_thaliana_ATGC_2006_08_24.cds_dna.COS_ULTRA.fasta
  -- single copy genes (DNA), 357 eukaryotic specific sequences
• A_thaliana_ATGC_2006_08_24.protein.COS_ULTRA.fasta
  -- single copy genes (proteins), 357 eukaryotic specific sequences
• A_thaliana_ATGC_2006_08_24.protein.COS_ULTRA.IDs.txt
  -- single copy genes, 357 eukaryotic specific sequence IDs
• http://cgpdb.ucdavis.edu/cgpdb2/uco_est_analysis.html
  -- EST analysis UCO (ultra conserved orthologs) stat